About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17802993_17806716_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17802993 - 17806716
Intron Length:
3724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTGAGTAGT
5'SS Class:
major
3'SS Sequence:
TGATTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGTTCTTAGAAT
Flanking Amino Acid:
WENPLMGWASTADPLSNMVL
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.2
77.8
38.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
82.7
0.74
0.9
76.7
37.3
Minor 5ss
33.4
-1.9
2.8
41.6
38.2
Minor BPS
56.1
0.27
1.8
76.74
40

Associated Gene:

Gene:
NDUFS4
Ensembl Gene ID:
ENSAPLG00000014315
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033865
17758969 - 17810181
51213
ENSAPLT00000014912
17763183 - 17810239
47057
ENSAPLT00000033776
17762987 - 17848190
85204
ENSAPLT00000045599
17763691 - 17810181
46491
ENSAPLT00000030690
17786113 - 17810181
24069
ENSAPLT00000039079
17769768 - 17810181
40414
ENSAPLT00000037535
17763183 - 17810239
47057
ENSAPLT00000024360
17762987 - 17810239
47253