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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17806791_17810077_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17806791 - 17810077
Intron Length:
3287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGTGTATT
5'SS Class:
major
3'SS Sequence:
CCACAACCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGACCAT
U12 Branch Point Sequence:
TCCCCCACAACC
Flanking Amino Acid:
EDAIAFAEKNGWNYDIEEKK
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
0.9
81.4
31.7
Major BPS
50.4
0.01
1.4
60.8
45.4
Major PPT
62.8
0.29
0.9
51.2
37.8
Minor 5ss
42.5
-0.8
2.8
56.3
42.5
Minor BPS
49.1
-0
1.9
61.38
43.7

Associated Gene:

Gene:
NDUFS4
Ensembl Gene ID:
ENSAPLG00000014315
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014912
17763183 - 17810239
47057
ENSAPLT00000033865
17758969 - 17810181
51213
ENSAPLT00000045599
17763691 - 17810181
46491
ENSAPLT00000033776
17762987 - 17848190
85204
ENSAPLT00000030690
17786113 - 17810181
24069
ENSAPLT00000039079
17769768 - 17810181
40414
ENSAPLT00000024360
17762987 - 17810239
47253
ENSAPLT00000037535
17763183 - 17810239
47057