Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17865176_17941202_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17865176 - 17941202

Intron Length:

76027

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTAAGCTGT

5'SS Class:

major

3'SS Sequence:

TTTCTCTTCATAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTCT

U12 Branch Point Sequence:

TTTCTCTTCATA

Flanking Amino Acid:

SSENFSSTSTLSKNTLNLSH

Intron Amino Acid Position:

212

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.9

0.47

1.1

64.4

42.2

Major BPS

38.1

-0.7

4.3

71.7

44.6

Major PPT

83.9

0.76

0.6

80.2

25.3

Minor 5ss

48.1

-0.2

2.9

70.5

41.1

Minor BPS

62.9

0.4

1.7

76.1

35.4

Associated Gene:

Gene:

ARL15

Ensembl Gene ID:

ENSAPLG00000004935

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043025

17865033 - 18080145

215113