Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17899040_17941202_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17899040 - 17941202

Intron Length:

42163

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTAAGCTGT

5'SS Class:

major

3'SS Sequence:

CTTGTTTTTTTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

AAGTCTTCATCT

Flanking Amino Acid:

SSENFSSTSTFLQIGFMVLL

Intron Amino Acid Position:

211

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.9

0.47

1.1

64.4

42.2

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

85.6

0.8

0.7

84.6

30.3

Minor 5ss

48.1

-0.2

2.9

70.5

41.1

Minor BPS

50.5

0.1

1.8

67.79

Associated Gene:

Gene:

ARL15

Ensembl Gene ID:

ENSAPLG00000004935

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040269

17865033 - 18089296

224264

ENSAPLT00000036839

17865033 - 18080145

215113

ENSAPLT00000024490

17865033 - 18047661

182629

ENSAPLT00000043907

17865033 - 18059255

194223