About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18010055_18020433_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18010055 - 18020433
Intron Length:
10379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAATTT
5'SS Class:
major
3'SS Sequence:
TTCTTCCTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
AAAGAAGTAATT
Flanking Amino Acid:
MCFRALCCKGP
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
76.6
32.7
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
79.7
0.67
0.9
77
31.7
Minor 5ss
43.4
-0.7
3.3
61.7
44.2
Minor BPS
39.6
-0.7
2.2
54.71
40.7

Associated Gene:

Gene:
ARL15
Ensembl Gene ID:
ENSAPLG00000004935
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005092
17865023 - 18020524
155502