About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18010055_18047610_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18010055 - 18047610
Intron Length:
37556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCAGGCA
5'SS Class:
major
3'SS Sequence:
TTCTTCCTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
AAAGAAGTAATT
Flanking Amino Acid:
LENLIGRHQQCFRALCCKGP
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.1
56.3
36.7
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
79.7
0.67
0.9
77
31.7
Minor 5ss
22.3
-3.2
3.4
29.8
43.2
Minor BPS
39.6
-0.7
2.2
54.71
40.7

Associated Gene:

Gene:
ARL15
Ensembl Gene ID:
ENSAPLG00000004935
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024490
17865033 - 18047661
182629