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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18010055_18055661_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18010055 - 18055661
Intron Length:
45607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
AAAGAAGTAATT
Flanking Amino Acid:
MYLVNYSLDNCFRALCCKGP
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.5
28.5
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
79.7
0.67
0.9
77
31.7
Minor 5ss
40.8
-1
2.8
57.5
39.6
Minor BPS
39.6
-0.7
2.2
54.71
40.7

Associated Gene:

Gene:
ARL15
Ensembl Gene ID:
ENSAPLG00000004935
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030240
17865023 - 18055787
190765