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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18010055_18059199_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18010055 - 18059199
Intron Length:
49145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGCATG
5'SS Class:
major
3'SS Sequence:
TTCTTCCTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
AAAGAAGTAATT
Flanking Amino Acid:
MCFRALCCKGP
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
67.1
43.8
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
79.7
0.67
0.9
77
31.7
Minor 5ss
49.2
-0
2.5
62.7
43.2
Minor BPS
39.6
-0.7
2.2
54.71
40.7

Associated Gene:

Gene:
ARL15
Ensembl Gene ID:
ENSAPLG00000004935
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043907
17865033 - 18059255
194223