Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18078315_18080129_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

18078315 - 18080129

Intron Length:

1815

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTAAGTAAA

5'SS Class:

major

3'SS Sequence:

TCTGTTTTATCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TCTGTTTTATCA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

1.1

76.6

33.9

Major BPS

100

1.24

0.5

100

Major PPT

81.5

0.71

0.9

81.4

Minor 5ss

-1.4

2.8

52.2

44.4

Minor BPS

55.1

0.16

1.7

65.74

41.7

Associated Gene:

Gene:

ARL15

Ensembl Gene ID:

ENSAPLG00000004935

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043025

17865033 - 18080145

215113

ENSAPLT00000036839

17865033 - 18080145

215113