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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_181300_183793_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
181300 - 183793
Intron Length:
2494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCAAG
5'SS Class:
major
3'SS Sequence:
TCTCTCCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
CTCTCCTTACAG
Flanking Amino Acid:
LRPLMDFLDGNLTLFATVCE
Intron Amino Acid Position:
1321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
71.6
40.1
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
86
0.81
0.7
80
25.6
Minor 5ss
40.4
-1.1
2.9
49
41.4
Minor BPS
55.1
0.02
1.9
60.06
47.5

Associated Gene:

Gene:
UNC13B
Ensembl Gene ID:
ENSAPLG00000003655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003123
161360 - 370186
208827
ENSAPLT00000003753
161360 - 353765
192406
ENSAPLT00000003128
161360 - 370186
208827