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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1817260_1818518_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1817260 - 1818518
Intron Length:
1259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
CCCCACTCACAC
Flanking Amino Acid:
GKDKEYAEIIRKQVLATKAE
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
64.9
0.37
1
67
29.8
Major PPT
80
0.68
0.8
73.8
31.3
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
37.5
-0.9
1.8
37.93
39.8

Associated Gene:

Gene:
UBE2R2
Ensembl Gene ID:
ENSAPLG00000003800
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003892
1816317 - 1867554
51238