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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1823468_1827840_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1823468 - 1827840
Intron Length:
4373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTGTTCTCAACT
Flanking Amino Acid:
TKMWHPNIYENGDVCISILH
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
86.9
0.83
0.7
84.6
30.4
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
67
0.61
1.6
79.52
42.8

Associated Gene:

Gene:
UBE2R2
Ensembl Gene ID:
ENSAPLG00000003800
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003892
1816317 - 1867554
51238