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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18239272_18239722_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
18239272 - 18239722
Intron Length:
451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATGCTCAGGGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
GATCTGTTAAAT
Flanking Amino Acid:
NGHLMIGNEKMMFSLLLDIL
Intron Amino Acid Position:
1917

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1.1
84.4
27.7
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
56
0.14
1.1
51.6
42.1
Minor 5ss
31.4
-2.1
2.4
34
41.4
Minor BPS
48.8
-0
2.1
68.65
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004801
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046337
18238360 - 18263798
25439