About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18240586_18241109_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18240586 - 18241109
Intron Length:
524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGATG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
GTTTCTAAGACT
Flanking Amino Acid:
GRNSRLLANTGTIVQEGGRV
Intron Amino Acid Position:
1718

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75.8
39.8
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
76.2
0.59
0.9
71.3
39.6
Minor 5ss
35.2
-1.7
3.3
47.8
47.9
Minor BPS
51.7
0.13
2
76.75
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004801
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046337
18238360 - 18263798
25439
ENSAPLT00000043612
18238360 - 18263798
25439
ENSAPLT00000034403
18238360 - 18264758
26399
ENSAPLT00000004950
18238360 - 18272617
34258