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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18241294_18244286_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
18241294 - 18244286
Intron Length:
2993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TACCCCAAAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CTATCTTTACCC
Flanking Amino Acid:
QEILSFTQSMVNEGVIMYEH
Intron Amino Acid Position:
1657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
35
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
57.9
0.18
1
52
35.4
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
64
0.42
1.6
70.6
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004801
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043612
18238360 - 18263798
25439
ENSAPLT00000034403
18238360 - 18264758
26399
ENSAPLT00000004950
18238360 - 18272617
34258
ENSAPLT00000046337
18238360 - 18263798
25439