Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18244460_18248326_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18244460 - 18248326

Intron Length:

3867

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCTGTTTT

5'SS Class:

major

3'SS Sequence:

TGATGGTTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CTACTTTTAATT

Flanking Amino Acid:

EVNKGLGVFPGSRKPISQHD

Intron Amino Acid Position:

1599

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

1.3

80.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

69.7

0.44

45.1

Minor 5ss

47.6

-0.2

2.6

67.4

43.7

Minor BPS

64.5

0.53

1.2

73.31

38.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004801

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034403

18238360 - 18264758

26399

ENSAPLT00000004950

18238360 - 18272617

34258

ENSAPLT00000046337

18238360 - 18263798

25439

ENSAPLT00000043612

18238360 - 18263798

25439