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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18248459_18252037_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18248459 - 18252037
Intron Length:
3579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTATCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
CTTTTGTTATCT
Flanking Amino Acid:
LEGQLLFVHNGAMSGGFNFQ
Intron Amino Acid Position:
1555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
76.2
39
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
83.2
0.75
0.8
77.4
36
Minor 5ss
43.7
-0.7
2.6
56.9
42.5
Minor BPS
53.7
0.19
2.3
78.81
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004801
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043612
18238360 - 18263798
25439
ENSAPLT00000034403
18238360 - 18264758
26399
ENSAPLT00000004950
18238360 - 18272617
34258
ENSAPLT00000046337
18238360 - 18263798
25439