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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18252237_18257162_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18252237 - 18257162
Intron Length:
4926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTCTTTATTT
Flanking Amino Acid:
PVIRVNRILQVWVGSVTEIT
Intron Amino Acid Position:
1489

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.5
0.84
0.7
81.2
36.5
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
71.2
0.74
1.5
84.84
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004801
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043612
18238360 - 18263798
25439
ENSAPLT00000034403
18238360 - 18264758
26399
ENSAPLT00000004950
18238360 - 18272617
34258
ENSAPLT00000046337
18238360 - 18263798
25439