About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18257340_18258079_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18257340 - 18258079
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCAT
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
GGTTCCTCATTT
Flanking Amino Acid:
IKLTKFTRKQVEQELIYYIH
Intron Amino Acid Position:
1430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
71.5
39.9
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
32.5
-2
3.4
47.3
48.1
Minor BPS
56.3
0.28
1.8
74.13
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004801
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043612
18238360 - 18263798
25439
ENSAPLT00000034403
18238360 - 18264758
26399
ENSAPLT00000004950
18238360 - 18272617
34258
ENSAPLT00000046337
18238360 - 18263798
25439