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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18307183_18309342_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18307183 - 18309342
Intron Length:
2160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
ATTATATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTTCTTAATT
Flanking Amino Acid:
PNRRKIISHTENDMASGDGN
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81.8
0.72
0.9
78.4
39.4
Minor 5ss
37.9
-1.4
3.3
56.5
47.6
Minor BPS
90.1
1.34
0.7
99.4
21.6

Associated Gene:

Gene:
ESM1
Ensembl Gene ID:
ENSAPLG00000004722
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004853
18305731 - 18313576
7846