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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18328422_18329311_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18328422 - 18329311
Intron Length:
890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTCTTT
Flanking Amino Acid:
KKFRRSDACQGDSGGPLICR
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
97.3
1.06
0.5
96.6
11.5
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
46
-0.2
3.6
82.89
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004213
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020790
18327264 - 18336458
9195
ENSAPLT00000004340
18328063 - 18355817
27755