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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18367611_18368750_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18367611 - 18368750
Intron Length:
1140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATGGT
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCCTTTTCT
Flanking Amino Acid:
KTIPHSSAVKAMNWCPWQSK
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
71.2
38.9
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
92.7
0.96
0.6
92.4
17.8
Minor 5ss
39.8
-1.1
3.3
58.3
46.4
Minor BPS
51.2
0.12
3.7
92.33
36.7

Associated Gene:

Gene:
CDC20B
Ensembl Gene ID:
ENSAPLG00000020360
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035672
18362251 - 18394077
31827