Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18367611_18368798_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

18367611 - 18368798

Intron Length:

1188

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGCAGTCA

5'SS Class:

weak_major

3'SS Sequence:

TTTTTCTTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCTT

U12 Branch Point Sequence:

TTTTCCTTTTCT

Flanking Amino Acid:

NIWPSDPGVKAMNWCPWQSK

Intron Amino Acid Position:

256

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

56.4

0.15

1.1

52.6

34.6

Major BPS

39.5

-0.6

4.3

85.7

34.9

Major PPT

92.7

0.96

0.6

92.4

17.8

Minor 5ss

31.6

-2.1

3.5

37.8

45.1

Minor BPS

51.2

0.12

3.7

92.33

36.7

Associated Gene:

Gene:

CDC20B

Ensembl Gene ID:

ENSAPLG00000020360

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024808

18362327 - 18374001

11675