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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18372639_18373937_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18372639 - 18373937
Intron Length:
1299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
AGCTTTCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TTTTTAGTAGCT
Flanking Amino Acid:
LHIAGLRDDYYLNILDWNLE
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.1
71.7
34.5
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
74.7
0.56
0.9
66.3
40.2
Minor 5ss
43.4
-0.7
2.8
62.5
42.2
Minor BPS
48.8
-0
2.4
80.65
41.2

Associated Gene:

Gene:
CDC20B
Ensembl Gene ID:
ENSAPLG00000020360
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035672
18362251 - 18394077
31827