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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18376808_18379717_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18376808 - 18379717
Intron Length:
2910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAAC
5'SS Class:
strong_major
3'SS Sequence:
AATGTATTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTCATTCAAT
Flanking Amino Acid:
NRRTKIGKKQKCSTQLPVVQ
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
74
36.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
64.6
0.33
1.1
59.2
45.5
Minor 5ss
45.8
-0.4
2.6
59.7
45.1
Minor BPS
53.9
0.2
2.2
78.39
43.5

Associated Gene:

Gene:
CDC20B
Ensembl Gene ID:
ENSAPLG00000020360
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035672
18362251 - 18394077
31827