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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18381991_18384676_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18381991 - 18384676
Intron Length:
2686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTCAGTCAT
5'SS Class:
major
3'SS Sequence:
TTTTTCCTAGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTTCCTAGCA
Flanking Amino Acid:
CTSGGSQNTREAFPYSTERP
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.3
68.8
43.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
85.4
0.8
0.8
82.6
27.7
Minor 5ss
30.9
-2.2
2.8
33.9
41.2
Minor BPS
62
0.37
1.9
79.88
36

Associated Gene:

Gene:
GPX8
Ensembl Gene ID:
ENSAPLG00000016750
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026083
18381868 - 18387920
6053