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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18385931_18387756_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18385931 - 18387756
Intron Length:
1826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACTATT
5'SS Class:
strong_major
3'SS Sequence:
ACCATTCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
CGTCACTAAAAT
Flanking Amino Acid:
EAEPAFKFLIDSSKKEPRWN
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
1
90.9
28.7
Major BPS
68
0.45
1
57.8
39
Major PPT
75.8
0.58
0.9
68.4
36.7
Minor 5ss
47.2
-0.3
2.7
68.8
41.8
Minor BPS
47.1
-0.1
2
64.73
44.9

Associated Gene:

Gene:
GPX8
Ensembl Gene ID:
ENSAPLG00000016750
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026083
18381868 - 18387920
6053