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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_183947_187111_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
183947 - 187111
Intron Length:
3165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTACCTGCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CTTCTCTTACCT
Flanking Amino Acid:
LDELSAVFGNSFQTRIDECV
Intron Amino Acid Position:
1270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.7
1.05
0.6
92.2
16.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
69.4
0.44
1
61.3
39.9
Minor 5ss
33.9
-1.8
2.8
41.8
44.8
Minor BPS
64.9
0.55
1.7
80.65
41.4

Associated Gene:

Gene:
UNC13B
Ensembl Gene ID:
ENSAPLG00000003655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003753
161360 - 353765
192406
ENSAPLT00000003128
161360 - 370186
208827
ENSAPLT00000003123
161360 - 370186
208827