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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18394883_18396571_F

Intron Information:

Intron Rank:
134986
Intron Class:
major
Intron Phase:
Intron Coordinates:
18394883 - 18396571
Intron Length:
1689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
GTTTACTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
86.3
0.82
0.7
80.7
24.4
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
54.4
0.22
2
78.57
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022623
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033329
18394772 - 18401695
6924