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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18394883_18401594_F

Intron Information:

Intron Rank:
134989
Intron Class:
major
Intron Phase:
Intron Coordinates:
18394883 - 18401594
Intron Length:
6712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCATTTCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
ATTCTCTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
76.7
0.6
0.8
71.9
32.3
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
50.3
0.09
1.8
71.81
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022623
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043058
18394772 - 18402926
8155