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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18398347_18401594_F

Intron Information:

Intron Rank:
134988
Intron Class:
major
Intron Phase:
Intron Coordinates:
18398347 - 18401594
Intron Length:
3248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTCAG
5'SS Class:
major
3'SS Sequence:
TCTCATTTCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
ATTCTCTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.2
61.5
44.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
76.7
0.6
0.8
71.9
32.3
Minor 5ss
45.2
-0.5
2.6
58.1
46.5
Minor BPS
50.3
0.09
1.8
71.81
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022623
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033329
18394772 - 18401695
6924