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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18426319_18427043_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18426319 - 18427043
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGGCTT
5'SS Class:
major
3'SS Sequence:
ATTCACTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATACTAAAAT
Flanking Amino Acid:
PLEELCLHIMKCNLGSPEDF
Intron Amino Acid Position:
863

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
67.8
42.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73.3
0.53
0.8
67.1
34.3
Minor 5ss
42.9
-0.8
3.4
61.4
44.5
Minor BPS
57.6
0.32
2
79.5
41.8

Associated Gene:

Gene:
DHX29
Ensembl Gene ID:
ENSAPLG00000009145
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022622
18419049 - 18443000
23952
ENSAPLT00000009583
18419049 - 18443000
23952