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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18428143_18428731_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18428143 - 18428731
Intron Length:
589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TATAATTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTCTGAAATT
Flanking Amino Acid:
VIDTGRTKENRYHESSQMSS
Intron Amino Acid Position:
794

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
69.5
0.44
1.1
72.2
42.2
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
50.4
0.09
2.3
76.34
41.1

Associated Gene:

Gene:
DHX29
Ensembl Gene ID:
ENSAPLG00000009145
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022622
18419049 - 18443000
23952
ENSAPLT00000009583
18419049 - 18443000
23952