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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18435515_18436548_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18435515 - 18436548
Intron Length:
1034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAA
U12 Branch Point Sequence:
TTTTTTCCAATT
Flanking Amino Acid:
LGCESGPGGKVHERSVQSDF
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
75.5
0.63
1
66.3
40.4
Major PPT
77.7
0.62
0.8
75.3
33.2
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
55.8
0.26
1.8
80.24
36

Associated Gene:

Gene:
DHX29
Ensembl Gene ID:
ENSAPLG00000009145
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022622
18419049 - 18443000
23952