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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18441438_18441998_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
18441438 - 18441998
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
79.5
36.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.2
0.88
0.7
85.8
27.5
Minor 5ss
41.3
-1
3.7
63.6
48.1
Minor BPS
63.5
0.5
1.6
78.46
39

Associated Gene:

Gene:
DHX29
Ensembl Gene ID:
ENSAPLG00000009145
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022622
18419049 - 18443000
23952
ENSAPLT00000009583
18419049 - 18443000
23952