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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18448289_18448827_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18448289 - 18448827
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTGAT
5'SS Class:
major
3'SS Sequence:
CTTTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TATGTTAAAAAT
Flanking Amino Acid:
LKPRTGKPAKEYPFSLDAFQ
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
76.9
31.7
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
88.9
0.88
0.6
88.5
21.1
Minor 5ss
42.2
-0.9
3.2
57.4
41.7
Minor BPS
43.3
-0.4
2
62.42
41.8

Associated Gene:

Gene:
MTREX
Ensembl Gene ID:
ENSAPLG00000009694
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010209
18444165 - 18489941
45777