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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18448941_18449748_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18448941 - 18449748
Intron Length:
808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TGTTTGAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
AATGTTTGAATA
Flanking Amino Acid:
HTSAGKTVCAEYAIALALRE
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.7
33.7
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
73
0.52
1
66.4
43.3
Minor 5ss
38.7
-1.3
2.8
47.9
41.8
Minor BPS
50.4
0.01
1.4
58.95
34.9

Associated Gene:

Gene:
MTREX
Ensembl Gene ID:
ENSAPLG00000009694
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010209
18444165 - 18489941
45777