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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18449924_18450179_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18449924 - 18450179
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGGTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CAATTTGTGACA
Flanking Amino Acid:
TASCLVMTTEILRSMLYRGS
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
27.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
73.5
0.53
0.9
64.8
41.3
Minor 5ss
38.2
-1.3
3
48.6
47.1
Minor BPS
46.3
-0.3
2
54.47
38.6

Associated Gene:

Gene:
MTREX
Ensembl Gene ID:
ENSAPLG00000009694
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010209
18444165 - 18489941
45777