Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18450271_18450603_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18450271 - 18450603

Intron Length:

333

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAACTTAA

5'SS Class:

major

3'SS Sequence:

TTTCCATTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

ACTTTAATAACA

Flanking Amino Acid:

FDEIHYMRDSERGVVWEETI

Intron Amino Acid Position:

244

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.9

0.56

1.2

71.1

37.5

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

87.6

0.85

0.7

85.2

28.1

Minor 5ss

44.6

-0.6

2.6

49.3

Minor BPS

52.8

0.08

1.9

67.62

38.4

Associated Gene:

Gene:

MTREX

Ensembl Gene ID:

ENSAPLG00000009694

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010209

18444165 - 18489941

45777