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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18450729_18453029_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18450729 - 18453029
Intron Length:
2301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TCTTTTTTTATA
Flanking Amino Acid:
AEWICHLHKQPCHVIYTDYR
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
80.7
34.7
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
90.9
0.92
0.6
87.5
22.9
Minor 5ss
43.9
-0.7
2.8
58.4
46.2
Minor BPS
60.3
0.32
1.6
69.65
37.1

Associated Gene:

Gene:
MTREX
Ensembl Gene ID:
ENSAPLG00000009694
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010209
18444165 - 18489941
45777