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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18453129_18454494_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18453129 - 18454494
Intron Length:
1366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGGCAT
5'SS Class:
major
3'SS Sequence:
GTTTTATATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TGTTTTATATCT
Flanking Amino Acid:
DGLRLVVDENGDFREDNFNT
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
71.6
39.7
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
74.8
0.56
0.9
67.5
43
Minor 5ss
34.8
-1.7
3.5
52
44.9
Minor BPS
53.9
0.2
1.9
77.05
39.5

Associated Gene:

Gene:
MTREX
Ensembl Gene ID:
ENSAPLG00000009694
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010209
18444165 - 18489941
45777