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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18454888_18455895_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18454888 - 18455895
Intron Length:
1008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGATA
5'SS Class:
major
3'SS Sequence:
ATTGCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TAAATTACAAAT
Flanking Amino Acid:
LQMTKLDFNTDEEKKMVEEV
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
71.7
39.6
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
81.4
0.71
0.8
77.7
36
Minor 5ss
34.8
-1.7
3.4
48.8
47
Minor BPS
42.4
-0.5
1.7
57.4
38.4

Associated Gene:

Gene:
MTREX
Ensembl Gene ID:
ENSAPLG00000009694
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010209
18444165 - 18489941
45777