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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18457859_18458800_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18457859 - 18458800
Intron Length:
942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGTTT
5'SS Class:
major
3'SS Sequence:
TCTGTTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GCTTGCTTAACT
Flanking Amino Acid:
EILFSEGLIKALFATETFAM
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
74.5
36.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
78.2
0.64
0.9
77.6
35.8
Minor 5ss
48.1
-0.2
3.2
72.7
44.5
Minor BPS
72
0.77
1.8
84.57
42.1

Associated Gene:

Gene:
MTREX
Ensembl Gene ID:
ENSAPLG00000009694
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010209
18444165 - 18489941
45777