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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18476472_18476783_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18476472 - 18476783
Intron Length:
312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTGA
5'SS Class:
major
3'SS Sequence:
CTAATACTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTATATATAACA
Flanking Amino Acid:
PFLQPGRLVKVKNEDDDFGW
Intron Amino Acid Position:
645

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
68.3
39.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
74.7
0.56
0.9
70.4
39.9
Minor 5ss
42.6
-0.8
3
56.2
47.9
Minor BPS
59.6
0.3
1.8
74.47
36.5

Associated Gene:

Gene:
MTREX
Ensembl Gene ID:
ENSAPLG00000009694
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010209
18444165 - 18489941
45777