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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18481665_18481983_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18481665 - 18481983
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TCTTACTAAAAA
Flanking Amino Acid:
NRQSVLKSIQEVQKRFPDGV
Intron Amino Acid Position:
748

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
29.6
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
86.4
0.82
0.6
85.3
22
Minor 5ss
43.2
-0.7
2.7
54.4
36.6
Minor BPS
54.5
0.14
2
69.52
42.5

Associated Gene:

Gene:
MTREX
Ensembl Gene ID:
ENSAPLG00000009694
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010209
18444165 - 18489941
45777