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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18482173_18483279_F

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
18482173 - 18483279
Intron Length:
1107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAATA
5'SS Class:
major
3'SS Sequence:
GACCCACCCCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
TCCTTCTGACCC
Flanking Amino Acid:
VYKLCERKAQIAMDIKAAKR
Intron Amino Acid Position:
811

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
74.3
36
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
54.7
0.11
0.8
44
32
Minor 5ss
35.3
-1.7
3.3
48.9
46.9
Minor BPS
51.4
0.02
1.8
62.1
43.7

Associated Gene:

Gene:
MTREX
Ensembl Gene ID:
ENSAPLG00000009694
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010209
18444165 - 18489941
45777