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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18483444_18484787_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18483444 - 18484787
Intron Length:
1344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTATTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTCTCTTTATTT
Flanking Amino Acid:
MKGRVACEISSADELLLTEM
Intron Amino Acid Position:
865

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
78.6
35.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
82.3
0.73
0.7
81.4
29
Minor 5ss
33.8
-1.8
3.4
49.7
46.6
Minor BPS
69.4
0.69
1.5
83.14
39

Associated Gene:

Gene:
MTREX
Ensembl Gene ID:
ENSAPLG00000009694
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010209
18444165 - 18489941
45777