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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18486184_18486583_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18486184 - 18486583
Intron Length:
400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTGC
5'SS Class:
major
3'SS Sequence:
TTTTATTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TAAACTTTAAAT
Flanking Amino Acid:
QLAGPLRQMQECAKRIAKVS
Intron Amino Acid Position:
920

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
66
40.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.2
0.7
1
82.5
32.7
Minor 5ss
44.3
-0.6
2.8
59.8
44.8
Minor BPS
65.7
0.57
1.4
76.56
39.2

Associated Gene:

Gene:
MTREX
Ensembl Gene ID:
ENSAPLG00000009694
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010209
18444165 - 18489941
45777