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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18490256_18491689_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18490256 - 18491689
Intron Length:
1434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTGTTCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTATGCTGATTT
Flanking Amino Acid:
IQGALVAILIVVYVSDFFKV
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
70.9
39.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
79.4
0.66
0.9
78.6
35
Minor 5ss
38.7
-1.3
2.8
51.8
39.1
Minor BPS
49.2
0.02
2.1
73.66
43.3

Associated Gene:

Gene:
PLPP1
Ensembl Gene ID:
ENSAPLG00000010771
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035474
18489847 - 18535296
45450
ENSAPLT00000034041
18489774 - 18549452
59679
ENSAPLT00000023588
18489847 - 18534969
45123
ENSAPLT00000011239
18489774 - 18548940
59167
ENSAPLT00000039272
18489774 - 18548940
59167