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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18491867_18503682_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18491867 - 18503682
Intron Length:
11816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTTTTTGCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATAACAACT
Flanking Amino Acid:
FSMYCMLFLALYLQARMKGD
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86
0.81
0.7
85.6
29.2
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
47.5
-0.1
2.1
75.39
40.6

Associated Gene:

Gene:
PLPP1
Ensembl Gene ID:
ENSAPLG00000010771
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023588
18489847 - 18534969
45123
ENSAPLT00000011239
18489774 - 18548940
59167
ENSAPLT00000039272
18489774 - 18548940
59167
ENSAPLT00000035474
18489847 - 18535296
45450
ENSAPLT00000034041
18489774 - 18549452
59679